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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10695 and 10696 are separated by 108 nucleotides
10696 and 10697 are separated by 2620 nucleotides
10697 and 10698 are separated by 1094 nucleotides
10698 and 10699 are separated by 4275 nucleotides
mRNA_2327: 10695 - Hypothetical Protein, at 616,454 to 617,684
10695
mRNA_2328: 10696 - KOG0192 Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs, at 617,793 to 619,842
10696
mRNA_2329: 10697 - K10908 POLRMT, RPO41 DNA-directed RNA polymerase, mitochondrial, at 622,463 to 626,733
10697
mRNA_2330: 10698 - KOG0583 Serine/threonine protein kinase, at 627,828 to 630,238
10698
mRNA_2331: 10699 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 634,514 to 637,179
10699
Group
Condition
mRNA
_2327
mRNA
_2328
mRNA
_2329
mRNA
_2330
mRNA
_2331
10695
10696
10697
10698
10699
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.2
N.D.
-3.6
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.1
N.D.
-0.9
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
N.D.
-0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.0
N.D.
+0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.2
N.D.
+0.0
-0.4
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
N.D.
+0.0
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.0
N.D.
-0.9
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.3
N.D.
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.1
N.D.
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.0
N.D.
-0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
+0.0
N.D.
+0.5
-0.2
growth on oleic acid
YNB Glucose
+0.1
-0.3
N.D.
+0.3
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.2
N.D.
+0.3
-1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.0
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
N.D.
-0.1
+0.4
auxotrophy
Dropout Complete
-0.5
+0.0
N.D.
+0.2
+0.7
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
N.D.
+1.0
-0.3
growth on ypd
YPD
-1.4
-0.1
N.D.
+2.4
-0.3
auxotrophy
YNB Glucose
-0.1
-0.2
N.D.
+0.7
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
N.D.
-0.1
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
N.D.
+0.0
+0.6
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