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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10698 and 10699 are separated by 4275 nucleotides
10699 and 10700 are separated by 860 nucleotides
10700 and 10701 are separated by 663 nucleotides
10701 and 10702 are separated by 231 nucleotides
mRNA_2330: 10698 - KOG0583 Serine/threonine protein kinase, at 627,828 to 630,238
10698
mRNA_2331: 10699 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 634,514 to 637,179
10699
mRNA_2332: 10700 - KOG1134 Uncharacterized conserved protein, at 638,040 to 641,999
10700
mRNA_2333: 10701 - KOG1159 NADP-dependent flavoprotein reductase, at 642,663 to 645,138
10701
mRNA_2334: 10702 - K17815 EXO5 exonuclease V, at 645,370 to 647,887
10702
Group
Condition
mRNA
_2330
mRNA
_2331
mRNA
_2332
mRNA
_2333
mRNA
_2334
10698
10699
10700
10701
10702
facs on lipid accumulation
Sorted High BODIPY Gate
-3.6
-0.5
-0.3
N.D.
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.2
-0.0
N.D.
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.4
+0.0
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.4
-0.1
N.D.
-0.5
growth on oleic acid
YNB Glucose
+0.3
-0.5
-0.7
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.6
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.3
-0.1
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+0.0
-0.6
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
-0.6
N.D.
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.2
-0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.9
+0.7
+0.0
N.D.
+0.2
auxotrophy
YNB Glucose
+0.7
+0.2
-0.8
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
+1.0
-0.3
-0.6
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
+0.0
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.6
-0.6
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.7
-0.0
N.D.
-0.1
auxotrophy
Dropout Complete
+0.2
+0.7
-0.1
N.D.
+0.1
growth on ypd
YPD
+2.4
-0.3
-0.3
N.D.
-0.1
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