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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10699 and 10700 are separated by 860 nucleotides
10700 and 10701 are separated by 663 nucleotides
10701 and 10702 are separated by 231 nucleotides
10702 and 10703 are separated by 130 nucleotides
mRNA_2331: 10699 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 634,514 to 637,179
10699
mRNA_2332: 10700 - KOG1134 Uncharacterized conserved protein, at 638,040 to 641,999
10700
mRNA_2333: 10701 - KOG1159 NADP-dependent flavoprotein reductase, at 642,663 to 645,138
10701
mRNA_2334: 10702 - K17815 EXO5 exonuclease V, at 645,370 to 647,887
10702
mRNA_2335: 10703 - K20098 ERCC6L2 DNA excision repair protein ERCC-6-like 2, at 648,018 to 653,331
10703
Group
Condition
mRNA
_2331
mRNA
_2332
mRNA
_2333
mRNA
_2334
mRNA
_2335
10699
10700
10701
10702
10703
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
-0.0
N.D.
-1.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.3
N.D.
-0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.1
N.D.
-0.5
-0.0
growth on oleic acid
YNB Glucose
-0.5
-0.7
N.D.
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.6
N.D.
+0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.2
N.D.
+0.1
+0.0
growth on ypd
YPD
-0.3
-0.3
N.D.
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.6
+0.1
N.D.
+0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.0
N.D.
-0.3
+0.2
auxotrophy
YNB Glucose
+0.2
-0.8
N.D.
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.4
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.6
N.D.
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.6
N.D.
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.0
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.0
N.D.
-0.1
-0.0
auxotrophy
Dropout Complete
+0.7
-0.1
N.D.
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+0.0
N.D.
+0.2
+0.1
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