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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10700 and 10701 are separated by 663 nucleotides
10701 and 10702 are separated by 231 nucleotides
10702 and 10703 are separated by 130 nucleotides
10703 and 10704 are separated by 635 nucleotides
mRNA_2332: 10700 - KOG1134 Uncharacterized conserved protein, at 638,040 to 641,999
10700
mRNA_2333: 10701 - KOG1159 NADP-dependent flavoprotein reductase, at 642,663 to 645,138
10701
mRNA_2334: 10702 - K17815 EXO5 exonuclease V, at 645,370 to 647,887
10702
mRNA_2335: 10703 - K20098 ERCC6L2 DNA excision repair protein ERCC-6-like 2, at 648,018 to 653,331
10703
mRNA_2336: 10704 - KOG0254 Predicted transporter (major facilitator superfamily), at 653,967 to 656,080
10704
Group
Condition
mRNA
_2332
mRNA
_2333
mRNA
_2334
mRNA
_2335
mRNA
_2336
10700
10701
10702
10703
10704
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
-1.0
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.2
-0.1
-0.7
auxotrophy
YNB Glucose
-0.8
N.D.
+0.0
+0.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.6
N.D.
+0.0
+0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.5
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
-0.1
-0.0
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.5
-0.0
+0.0
growth on oleic acid
YNB Glucose
-0.7
N.D.
-0.0
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.2
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.1
-0.1
-0.2
growth on ypd
YPD
-0.3
N.D.
-0.1
+0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.1
-0.1
-0.0
auxotrophy
Dropout Complete
-0.1
N.D.
+0.1
+0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.6
N.D.
+0.5
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.6
N.D.
+0.4
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
+0.2
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
-0.3
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
-0.1
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.0
-0.0
+0.0
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