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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10703 and 10704 are separated by 635 nucleotides
10704 and 10705 are separated by 38 nucleotides
10705 and 10706 are separated by 970 nucleotides
10706 and 10707 are separated by 165 nucleotides
mRNA_2335: 10703 - K20098 ERCC6L2 DNA excision repair protein ERCC-6-like 2, at 648,018 to 653,331
10703
mRNA_2336: 10704 - KOG0254 Predicted transporter (major facilitator superfamily), at 653,967 to 656,080
10704
mRNA_2337: 10705 - BLAST general substrate transporter [Wallemia mellicola..., at 656,119 to 656,520
10705
mRNA_2338: 10706 - K05545 DUS4 tRNA-dihydrouridine synthase 4, at 657,491 to 659,083
10706
mRNA_2339: 10707 - SUPERFAMILY--SSF55298, at 659,249 to 660,620
10707
Group
Condition
mRNA
_2335
mRNA
_2336
mRNA
_2337
mRNA
_2338
mRNA
_2339
10703
10704
10705
10706
10707
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.7
-0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.6
-0.7
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
-0.3
-0.4
N.D.
auxotrophy
Dropout Complete
+0.3
-0.4
-0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
-0.4
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
+0.0
-0.3
-0.5
N.D.
auxotrophy
YNB Glucose
+0.2
-0.2
-0.1
-0.6
N.D.
growth on ypd
YPD
+0.0
+0.0
-0.6
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.2
+0.0
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.4
-0.4
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
-0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
+0.0
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.1
-0.2
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
-0.4
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
+0.1
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
+0.2
-0.6
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.7
-0.2
+1.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.4
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
-0.3
+0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
-0.1
+0.4
N.D.
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