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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10707 and 10708 are separated by 418 nucleotides
10708 and 10709 are separated by 809 nucleotides
10709 and 10710 are separated by 214 nucleotides
10710 and 10711 are separated by 170 nucleotides
mRNA_2339: 10707 - SUPERFAMILY--SSF55298, at 659,249 to 660,620
10707
mRNA_2340: 10708 - K06927 DPH6 diphthine-ammonia ligase, at 661,039 to 662,267
10708
mRNA_2341: 10709 - K03021 RPC2, POLR3B DNA-directed RNA polymerase III subunit RPC2, at 663,077 to 667,244
10709
mRNA_2342: 10710 - Hypothetical Protein, at 667,459 to 669,644
10710
mRNA_2343: 10711 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 669,815 to 670,967
10711
Group
Condition
mRNA
_2339
mRNA
_2340
mRNA
_2341
mRNA
_2342
mRNA
_2343
10707
10708
10709
10710
10711
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
-0.2
-1.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
-0.0
-1.4
growth on ypd
YPD
N.D.
N.D.
N.D.
-0.2
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.1
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
+0.1
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
+0.2
-0.5
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.0
+0.0
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
+0.2
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
+0.3
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.1
+0.7
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