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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10711 and 10712 are separated by 237 nucleotides
10712 and 10713 are separated by 255 nucleotides
10713 and 10714 are separated by 724 nucleotides
10714 and 10715 are separated by 378 nucleotides
mRNA_2343: 10711 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 669,815 to 670,967
10711
mRNA_2344: 10712 - Hypothetical Protein, at 671,205 to 671,888
10712
mRNA_2345: 10713 - KOG1399 Flavin-containing monooxygenase, at 672,144 to 674,998
10713
mRNA_2346: 10714 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 675,723 to 677,238
10714
mRNA_2347: 10715 - K09207 KLF6_7 krueppel-like factor 6/7, at 677,617 to 679,955
10715
Group
Condition
mRNA
_2343
mRNA
_2344
mRNA
_2345
mRNA
_2346
mRNA
_2347
10711
10712
10713
10714
10715
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.6
-0.4
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.6
-0.1
+0.7
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.6
-0.4
+0.2
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.3
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.1
+0.2
-0.4
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
-0.3
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.4
-0.3
+0.3
+0.9
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
-0.3
+0.4
-0.2
growth on oleic acid
YNB Glucose
+0.0
-0.2
+0.0
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.3
+0.1
+0.9
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
-0.2
-0.1
+0.1
auxotrophy
YNB Glucose
-0.1
+0.2
-0.2
+0.2
+0.0
auxotrophy
Dropout Complete
-0.1
+0.0
-0.3
+0.5
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
+0.0
+0.1
-0.1
growth on ypd
YPD
-0.5
+0.4
+0.1
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.6
+0.5
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.1
+0.7
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.1
+0.6
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
-0.1
+0.7
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.1
+0.3
-0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
+0.5
+0.4
+0.4
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