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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10713 and 10714 are separated by 724 nucleotides
10714 and 10715 are separated by 378 nucleotides
10715 and 10716 are separated by 2372 nucleotides
10716 and 10717 are separated by 282 nucleotides
mRNA_2345: 10713 - KOG1399 Flavin-containing monooxygenase, at 672,144 to 674,998
10713
mRNA_2346: 10714 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 675,723 to 677,238
10714
mRNA_2347: 10715 - K09207 KLF6_7 krueppel-like factor 6/7, at 677,617 to 679,955
10715
mRNA_2348: 10716 - K00762 pyrE orotate phosphoribosyltransferase, at 682,328 to 683,011
10716
mRNA_2349: 10717 - KOG3419 Mitochondrial/chloroplast ribosomal protein S16, at 683,294 to 683,869
10717
Group
Condition
mRNA
_2345
mRNA
_2346
mRNA
_2347
mRNA
_2348
mRNA
_2349
10713
10714
10715
10716
10717
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.4
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.3
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.4
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.4
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
+0.2
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.0
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
+0.5
-0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.7
-0.2
N.D.
N.D.
growth on ypd
YPD
+0.1
+0.3
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.2
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.0
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.3
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.9
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.9
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.4
+0.4
N.D.
N.D.
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