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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10717 and 10718 are separated by 285 nucleotides
10718 and 10719 are separated by 1359 nucleotides
10719 and 10720 are separated by 805 nucleotides
10720 and 10721 are separated by 410 nucleotides
mRNA_2349: 10717 - KOG3419 Mitochondrial/chloroplast ribosomal protein S16, at 683,294 to 683,869
10717
mRNA_2350: 10718 - K14829 IPI3 pre-rRNA-processing protein IPI3, at 684,155 to 686,161
10718
mRNA_2351: 10719 - Hypothetical Protein, at 687,521 to 688,021
10719
mRNA_2352: 10720 - K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e, at 688,827 to 689,561
10720
mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689,972 to 692,124
10721
Group
Condition
mRNA
_2349
mRNA
_2350
mRNA
_2351
mRNA
_2352
mRNA
_2353
10717
10718
10719
10720
10721
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.2
-1.7
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.7
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-1.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
-1.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
-1.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.4
-1.2
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.4
-0.8
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
-0.0
-0.1
auxotrophy
Dropout Complete
N.D.
N.D.
+0.4
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.0
+0.4
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
+0.4
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.5
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.1
+0.5
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.1
+0.8
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.2
+0.9
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+1.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
+1.3
-0.2
growth on ypd
YPD
N.D.
N.D.
-0.4
+1.7
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+1.5
-0.4
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