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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10718 and 10719 are separated by 1359 nucleotides
10719 and 10720 are separated by 805 nucleotides
10720 and 10721 are separated by 410 nucleotides
10721 and 10722 are separated by 132 nucleotides
mRNA_2350: 10718 - K14829 IPI3 pre-rRNA-processing protein IPI3, at 684,155 to 686,161
10718
mRNA_2351: 10719 - Hypothetical Protein, at 687,521 to 688,021
10719
mRNA_2352: 10720 - K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e, at 688,827 to 689,561
10720
mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689,972 to 692,124
10721
mRNA_2354: 10722 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 692,257 to 694,787
10722
Group
Condition
mRNA
_2350
mRNA
_2351
mRNA
_2352
mRNA
_2353
mRNA
_2354
10718
10719
10720
10721
10722
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-1.7
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-1.1
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
-0.7
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-1.0
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-1.2
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
-1.1
+0.2
+0.3
auxotrophy
YNB Glucose
N.D.
+0.4
-0.8
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.4
-0.1
-0.4
auxotrophy
Dropout Complete
N.D.
+0.4
-0.6
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.0
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.0
-0.2
+0.2
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.5
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.8
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.4
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
+0.5
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.4
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+1.3
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
+0.9
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+1.2
-0.2
+0.2
growth on ypd
YPD
N.D.
-0.4
+1.7
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+1.5
-0.4
+0.2
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