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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10719 and 10720 are separated by 805 nucleotides
10720 and 10721 are separated by 410 nucleotides
10721 and 10722 are separated by 132 nucleotides
10722 and 10723 are separated by 67 nucleotides
mRNA_2351: 10719 - Hypothetical Protein, at 687,521 to 688,021
10719
mRNA_2352: 10720 - K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e, at 688,827 to 689,561
10720
mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689,972 to 692,124
10721
mRNA_2354: 10722 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 692,257 to 694,787
10722
mRNA_2355: 10723 - Hypothetical Protein, at 694,855 to 695,610
10723
Group
Condition
mRNA
_2351
mRNA
_2352
mRNA
_2353
mRNA
_2354
mRNA
_2355
10719
10720
10721
10722
10723
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-1.7
+0.1
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.7
-0.1
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-1.1
-0.1
-0.0
-0.2
auxotrophy
YNB Glucose
+0.4
-0.8
-0.1
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-1.2
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-1.0
-0.2
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.1
+0.0
-0.5
growth on oleic acid
YNB Glucose
-0.1
+0.5
+0.0
-0.1
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.1
+0.2
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.8
-0.1
-0.2
-0.6
auxotrophy
Dropout Complete
+0.4
-0.6
+0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.0
-0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+1.3
-0.2
-0.2
-0.8
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
-0.1
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.4
-0.2
+0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.5
-0.1
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.9
+0.1
+0.3
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.4
-0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+1.2
-0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+1.5
-0.4
+0.2
-0.2
growth on ypd
YPD
-0.4
+1.7
-0.1
+0.2
+0.7
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