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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10720 and 10721 are separated by 410 nucleotides
10721 and 10722 are separated by 132 nucleotides
10722 and 10723 are separated by 67 nucleotides
10723 and 10724 are separated by 857 nucleotides
mRNA_2352: 10720 - K02903 RP-L28e, RPL28 large subunit ribosomal protein L28e, at 688,827 to 689,561
10720
mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689,972 to 692,124
10721
mRNA_2354: 10722 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 692,257 to 694,787
10722
mRNA_2355: 10723 - Hypothetical Protein, at 694,855 to 695,610
10723
mRNA_2356: 10724 - Hypothetical Protein, at 696,468 to 697,388
10724
Group
Condition
mRNA
_2352
mRNA
_2353
mRNA
_2354
mRNA
_2355
mRNA
_2356
10720
10721
10722
10723
10724
facs on lipid accumulation
Sorted High BODIPY Gate
-1.7
+0.1
+0.2
-0.2
+0.0
auxotrophy
YNB Glucose
-0.8
-0.1
+0.2
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.0
-0.2
+0.2
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.2
+0.1
+0.1
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-1.1
-0.1
-0.0
-0.2
+0.7
ypd buoyancy
40 hrs High Buoyancy
-0.7
-0.1
+0.2
-0.2
+0.4
growth on ricinoleic acid
YNB Glucose
+0.4
-0.1
-0.4
+0.2
-0.5
growth on oleic acid
YNB Glucose
+0.5
+0.0
-0.1
-0.6
-0.2
auxotrophy
Dropout Complete
-0.6
+0.1
+0.0
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.0
-0.5
+0.4
growth on oleic acid
YNB Oleic Acid
+0.8
-0.1
-0.2
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
+0.2
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.1
-0.1
+0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.2
+0.3
+0.2
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
+0.1
+0.3
-0.6
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
+0.3
-0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
+0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.3
-0.2
-0.2
-0.8
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.5
-0.4
+0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.2
-0.2
+0.2
-0.0
+0.1
growth on ypd
YPD
+1.7
-0.1
+0.2
+0.7
-0.1
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