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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10721 and 10722 are separated by 132 nucleotides
10722 and 10723 are separated by 67 nucleotides
10723 and 10724 are separated by 857 nucleotides
10724 and 10725 are separated by 1199 nucleotides
mRNA_2353: 10721 - SUPERFAMILY--SSF88713, at 689,972 to 692,124
10721
mRNA_2354: 10722 - K01580 E4.1.1.15, gadB, gadA, GAD glutamate decarboxylase, at 692,257 to 694,787
10722
mRNA_2355: 10723 - Hypothetical Protein, at 694,855 to 695,610
10723
mRNA_2356: 10724 - Hypothetical Protein, at 696,468 to 697,388
10724
mRNA_2357: 10725 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 698,588 to 700,327
10725
Group
Condition
mRNA
_2353
mRNA
_2354
mRNA
_2355
mRNA
_2356
mRNA
_2357
10721
10722
10723
10724
10725
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-0.6
+0.0
-0.3
growth on oleic acid
YNB Glucose
+0.0
-0.1
-0.6
-0.2
-0.2
auxotrophy
YNB Glucose
-0.1
+0.2
-0.4
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.2
-0.2
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.5
+0.4
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
-0.0
-0.1
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
-0.6
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.2
-0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
-0.8
+0.4
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.2
-0.0
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.2
+0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.2
+0.7
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
-0.4
+0.2
-0.5
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.2
+0.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
-0.1
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
-0.2
+0.4
-0.0
growth on ypd
YPD
-0.1
+0.2
+0.7
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.2
+0.7
-1.0
auxotrophy
Dropout Complete
+0.1
+0.0
+0.0
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.2
-0.3
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.3
+0.1
+0.8
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