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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10727 and 10728 are separated by 836 nucleotides
10728 and 10729 are separated by 421 nucleotides
10729 and 10730 are separated by 1005 nucleotides
10730 and 10731 are separated by 392 nucleotides
mRNA_2359: 10727 - K02927 RP-L40e, RPL40 large subunit ribosomal protein L40e, at 700,994 to 701,674
10727
mRNA_2360: 10728 - Hypothetical Protein, at 702,511 to 702,996
10728
mRNA_2361: 10729 - Hypothetical Protein, at 703,418 to 705,625
10729
mRNA_2362: 10730 - HMMPfam-Pentatricopeptide repeat domain-PF13812, at 706,631 to 709,566
10730
mRNA_2363: 10731 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 709,959 to 711,160
10731
Group
Condition
mRNA
_2359
mRNA
_2360
mRNA
_2361
mRNA
_2362
mRNA
_2363
10727
10728
10729
10730
10731
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-1.8
-0.2
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.1
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-1.0
-0.2
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
-0.4
N.D.
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.6
+0.0
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.1
N.D.
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.4
+0.5
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
+0.1
N.D.
-0.2
growth on ypd
YPD
N.D.
-1.3
+0.4
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.4
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.3
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose
N.D.
+0.3
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.5
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.6
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
-0.0
N.D.
+0.0
auxotrophy
Dropout Complete
N.D.
+0.3
+0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.1
N.D.
+0.4
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