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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10730 and 10731 are separated by 392 nucleotides
10731 and 10732 are separated by 845 nucleotides
10732 and 10733 are separated by 750 nucleotides
10733 and 10734 are separated by 489 nucleotides
mRNA_2362: 10730 - HMMPfam-Pentatricopeptide repeat domain-PF13812, at 706,631 to 709,566
10730
mRNA_2363: 10731 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 709,959 to 711,160
10731
mRNA_2364: 10732 - K20471 COPD, ARCN1, RET2 coatomer subunit delta, at 712,006 to 714,085
10732
mRNA_2365: 10733 - HMMPfam-C2 domain-PF00168,HMMPfam-Munc13 (mammalian uncoordinated) homology domain-PF10540,ProSiteProfiles-Munc13-homology domain 1 (MHD1) profile.-PS51258,ProSiteProfiles-Munc13-homology domain 2 (MHD2) profile.-PS51259,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 714,836 to 719,439
10733
mRNA_2366: 10734 - HMMPfam-GDP/GTP exchange factor Sec2p-PF06428,SUPERFAMILY--SSF144284, at 719,929 to 722,612
10734
Group
Condition
mRNA
_2362
mRNA
_2363
mRNA
_2364
mRNA
_2365
mRNA
_2366
10730
10731
10732
10733
10734
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+1.3
-2.6
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.2
-0.7
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-0.7
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
+0.3
-1.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
+1.4
-2.5
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.6
-1.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.0
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.2
-0.6
+0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.3
-0.5
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.9
-1.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.3
-0.8
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.2
-0.6
+0.4
auxotrophy
YNB Glucose
N.D.
-0.2
+1.0
-0.7
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.6
+0.9
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.6
-0.8
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.5
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+1.4
-0.6
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
+1.1
-0.4
+0.0
growth on ypd
YPD
N.D.
+0.4
+0.4
+0.5
-0.0
auxotrophy
Dropout Complete
N.D.
+0.0
+1.8
+0.0
-0.1
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