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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10733 and 10734 are separated by 489 nucleotides
10734 and 10735 are separated by 677 nucleotides
10735 and 10736 are separated by 634 nucleotides
10736 and 10737 are separated by 1640 nucleotides
mRNA_2365: 10733 - HMMPfam-C2 domain-PF00168,HMMPfam-Munc13 (mammalian uncoordinated) homology domain-PF10540,ProSiteProfiles-Munc13-homology domain 1 (MHD1) profile.-PS51258,ProSiteProfiles-Munc13-homology domain 2 (MHD2) profile.-PS51259,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 714,836 to 719,439
10733
mRNA_2366: 10734 - HMMPfam-GDP/GTP exchange factor Sec2p-PF06428,SUPERFAMILY--SSF144284, at 719,929 to 722,612
10734
mRNA_2367: 10735 - HMMPfam-Salt tolerance down-regulator-PF13945, at 723,290 to 728,071
10735
mRNA_2368: 10736 - Hypothetical Protein, at 728,706 to 728,915
10736
mRNA_2369: 10737 - K02997 RP-S9e, RPS9 small subunit ribosomal protein S9e, at 730,556 to 731,871
10737
Group
Condition
mRNA
_2365
mRNA
_2366
mRNA
_2367
mRNA
_2368
mRNA
_2369
10733
10734
10735
10736
10737
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.6
+0.4
N.D.
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.5
+0.2
N.D.
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.2
+0.3
N.D.
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.7
-0.0
N.D.
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-1.0
-0.0
N.D.
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+0.4
N.D.
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+0.3
N.D.
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-1.1
+0.1
N.D.
+0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.0
N.D.
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.5
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
N.D.
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.2
N.D.
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.4
N.D.
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.0
N.D.
+0.8
N.D.
auxotrophy
YNB Glucose
-0.7
+0.0
N.D.
+1.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.4
N.D.
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.0
N.D.
+0.8
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
N.D.
+0.5
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.3
N.D.
+0.6
N.D.
growth on ypd
YPD
+0.5
-0.0
N.D.
+0.2
N.D.
auxotrophy
Dropout Complete
+0.0
-0.1
N.D.
+0.8
N.D.
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