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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10734 and 10735 are separated by 677 nucleotides
10735 and 10736 are separated by 634 nucleotides
10736 and 10737 are separated by 1640 nucleotides
10737 and 10738 are separated by 551 nucleotides
mRNA_2366: 10734 - HMMPfam-GDP/GTP exchange factor Sec2p-PF06428,SUPERFAMILY--SSF144284, at 719,929 to 722,612
10734
mRNA_2367: 10735 - HMMPfam-Salt tolerance down-regulator-PF13945, at 723,290 to 728,071
10735
mRNA_2368: 10736 - Hypothetical Protein, at 728,706 to 728,915
10736
mRNA_2369: 10737 - K02997 RP-S9e, RPS9 small subunit ribosomal protein S9e, at 730,556 to 731,871
10737
mRNA_2370: 10738 - K01410 MIPEP mitochondrial intermediate peptidase, at 732,423 to 734,982
10738
Group
Condition
mRNA
_2366
mRNA
_2367
mRNA
_2368
mRNA
_2369
mRNA
_2370
10734
10735
10736
10737
10738
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
-0.3
N.D.
N.D.
growth on ypd
YPD
-0.0
N.D.
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
N.D.
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
N.D.
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
+0.3
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
N.D.
+0.8
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.7
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
+0.8
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.3
N.D.
+0.6
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose
+0.0
N.D.
+1.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.8
N.D.
N.D.
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