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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10738 and 10739 are separated by 20 nucleotides
10739 and 10740 are separated by 2030 nucleotides
10740 and 10741 are separated by 751 nucleotides
10741 and 10742 are separated by 1216 nucleotides
mRNA_2370: 10738 - K01410 MIPEP mitochondrial intermediate peptidase, at 732,423 to 734,982
10738
mRNA_2371: 10739 - BLAST Tubulin beta-2 chain [Grifola frondosa], at 735,003 to 736,788
10739
mRNA_2372: 10740 - Hypothetical Protein, at 738,819 to 739,851
10740
mRNA_2373: 10741 - K08286 E2.7.11.- protein-serine/threonine kinase, at 740,603 to 745,355
10741
mRNA_2374: 10742 - K12897 TRA2 transformer-2 protein, at 746,572 to 748,318
10742
Group
Condition
mRNA
_2370
mRNA
_2371
mRNA
_2372
mRNA
_2373
mRNA
_2374
10738
10739
10740
10741
10742
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.9
+0.0
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
-0.2
-0.8
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.3
-0.8
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.2
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.6
-0.4
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.2
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.1
+0.1
N.D.
growth on ypd
YPD
N.D.
-0.1
+0.2
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.2
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.5
+0.4
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
+0.3
+0.3
N.D.
auxotrophy
YNB Glucose
N.D.
-0.8
+0.7
+0.8
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.3
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.2
+0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.5
+0.1
+0.2
N.D.
auxotrophy
Dropout Complete
N.D.
-0.2
+0.8
+0.5
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
+1.3
+0.8
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
+1.0
+1.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
+1.8
+1.4
N.D.
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