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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10741 and 10742 are separated by 1216 nucleotides
10742 and 10743 are separated by 241 nucleotides
10743 and 10744 are separated by 259 nucleotides
10744 and 10745 are separated by 321 nucleotides
mRNA_2373: 10741 - K08286 E2.7.11.- protein-serine/threonine kinase, at 740,603 to 745,355
10741
mRNA_2374: 10742 - K12897 TRA2 transformer-2 protein, at 746,572 to 748,318
10742
mRNA_2375: 10743 - Hypothetical Protein, at 748,560 to 749,428
10743
mRNA_2376: 10744 - Hypothetical Protein, at 749,688 to 751,493
10744
mRNA_2377: 10745 - KOG0725 Reductases with broad range of substrate specificities, at 751,815 to 752,999
10745
Group
Condition
mRNA
_2373
mRNA
_2374
mRNA
_2375
mRNA
_2376
mRNA
_2377
10741
10742
10743
10744
10745
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
N.D.
-0.7
+0.3
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.4
-0.7
-0.1
growth on ypd
YPD
-0.0
N.D.
-0.3
-0.6
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
N.D.
-0.5
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
N.D.
+0.0
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
-0.5
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.3
-0.3
+0.2
growth on oleic acid
YNB Glucose
+0.4
N.D.
-0.2
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
N.D.
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.4
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
-0.1
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
+0.4
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.0
-0.4
+0.5
growth on oleic acid
YNB Oleic Acid
+0.7
N.D.
-0.1
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.6
N.D.
+0.4
-0.1
-0.4
auxotrophy
Dropout Complete
+0.5
N.D.
+0.7
-0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.4
N.D.
-0.2
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.8
N.D.
+0.3
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.5
N.D.
-0.1
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
+1.2
-0.0
-0.5
auxotrophy
YNB Glucose
+0.8
N.D.
+1.1
-0.2
-0.4
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