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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10747 and 10748 are separated by 364 nucleotides
10748 and 10749 are separated by 647 nucleotides
10749 and 10750 are separated by 130 nucleotides
10750 and 10751 are separated by 590 nucleotides
mRNA_2379: 10747 - HMMPfam-DASH complex subunit Duo1-PF08651, at 754,598 to 756,012
10747
mRNA_2380: 10748 - K07889 RAB5C Ras-related protein Rab-5C, at 756,377 to 757,308
10748
mRNA_2381: 10749 - KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins, at 757,956 to 760,560
10749
mRNA_2382: 10750 - HMMPfam-Zinc-binding loop region of homing endonuclease-PF05551,SUPERFAMILY--SSF54060, at 760,691 to 762,074
10750
mRNA_2383: 10751 - Hypothetical Protein, at 762,665 to 764,140
10751
Group
Condition
mRNA
_2379
mRNA
_2380
mRNA
_2381
mRNA
_2382
mRNA
_2383
10747
10748
10749
10750
10751
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.6
-0.8
N.D.
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.0
-2.5
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.3
-2.4
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.9
-1.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
-1.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
-0.0
-0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
-0.4
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
-0.2
N.D.
-0.1
auxotrophy
Dropout Complete
+0.1
+0.3
-1.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.3
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
-0.5
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
-0.0
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
-0.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
-0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
-0.3
+0.4
-0.0
N.D.
+0.0
auxotrophy
YNB Glucose
-0.2
+0.3
-0.0
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.1
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
+0.5
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.7
+0.7
N.D.
-0.0
growth on ypd
YPD
+0.2
+0.2
+0.3
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.0
+0.4
+0.7
N.D.
-0.1
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