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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10751 and 10752 are separated by 19 nucleotides
10752 and 10753 are separated by 279 nucleotides
10753 and 10754 are separated by 471 nucleotides
10754 and 10755 are separated by 196 nucleotides
mRNA_2383: 10751 - Hypothetical Protein, at 762,665 to 764,140
10751
mRNA_2384: 10752 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 764,160 to 765,511
10752
mRNA_2385: 10753 - K01885 EARS, gltX glutamyl-tRNA synthetase, at 765,791 to 769,298
10753
mRNA_2386: 10754 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 769,770 to 774,280
10754
mRNA_2387: 10755 - K17781 TIM13 mitochondrial import inner membrane translocase subunit TIM13, at 774,477 to 775,750
10755
Group
Condition
mRNA
_2383
mRNA
_2384
mRNA
_2385
mRNA
_2386
mRNA
_2387
10751
10752
10753
10754
10755
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
N.D.
N.D.
+0.2
-0.7
growth on ypd
YPD
-0.2
N.D.
N.D.
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
N.D.
+0.3
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
N.D.
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
N.D.
+0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
N.D.
+0.5
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
N.D.
+0.5
-0.3
growth on oleic acid
YNB Glucose
-0.1
N.D.
N.D.
+0.6
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
+0.5
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
N.D.
+0.6
+0.0
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
N.D.
+1.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
N.D.
+1.3
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
N.D.
+1.2
-0.5
auxotrophy
Dropout Complete
-0.1
N.D.
N.D.
+1.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
N.D.
+0.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
N.D.
+1.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
N.D.
+0.3
+0.5
auxotrophy
YNB Glucose
-0.0
N.D.
N.D.
+1.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
N.D.
+0.4
+0.6
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