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Fitness for 4 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10752 and 10753 are separated by 279 nucleotides
10753 and 10754 are separated by 471 nucleotides
10754 and 10755 are separated by 196 nucleotides
mRNA_2384: 10752 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 764,160 to 765,511
10752
mRNA_2385: 10753 - K01885 EARS, gltX glutamyl-tRNA synthetase, at 765,791 to 769,298
10753
mRNA_2386: 10754 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 769,770 to 774,280
10754
mRNA_2387: 10755 - K17781 TIM13 mitochondrial import inner membrane translocase subunit TIM13, at 774,477 to 775,750
10755
Group
Condition
mRNA
_2384
mRNA
_2385
mRNA
_2386
mRNA
_2387
10752
10753
10754
10755
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
-0.7
growth on ypd
YPD
N.D.
N.D.
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.5
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.5
-0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.6
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.6
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.5
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+1.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+1.2
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.4
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+1.3
-0.4
auxotrophy
Dropout Complete
N.D.
N.D.
+1.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+1.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.4
+0.6
auxotrophy
YNB Glucose
N.D.
N.D.
+1.4
-0.1
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