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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10756 and 10757 are separated by 900 nucleotides
10757 and 10758 are separated by 709 nucleotides
10758 and 10759 are separated by 324 nucleotides
10759 and 10760 are separated by 309 nucleotides
mRNA_2388: 10756 - K14781 DHR2 ATP-dependent RNA helicase DHR2, at 595 to 3,686
10756
mRNA_2389: 10757 - K10901 BLM, RECQL3, SGS1 bloom syndrome protein, at 4,587 to 7,344
10757
mRNA_2390: 10758 - Hypothetical Protein, at 8,054 to 9,276
10758
mRNA_2391: 10759 - HMMPfam-Chaperone for protein-folding within the ER, fungal-PF10681, at 9,601 to 10,907
10759
mRNA_2392: 10760 - K10364 CAPZA capping protein (actin filament) muscle Z-line, alpha, at 11,217 to 13,113
10760
Group
Condition
mRNA
_2388
mRNA
_2389
mRNA
_2390
mRNA
_2391
mRNA
_2392
10756
10757
10758
10759
10760
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.3
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.5
-0.3
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.5
N.D.
+0.4
auxotrophy
Dropout Complete
N.D.
-0.4
-0.0
N.D.
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
+0.4
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
-0.1
N.D.
+0.0
growth on ypd
YPD
N.D.
+0.1
+0.5
N.D.
-0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.5
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose
N.D.
-0.2
+0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-0.5
N.D.
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
+0.3
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.1
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
-0.4
N.D.
+1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
+0.5
N.D.
-0.2
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