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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10757 and 10758 are separated by 709 nucleotides
10758 and 10759 are separated by 324 nucleotides
10759 and 10760 are separated by 309 nucleotides
10760 and 10761 are separated by 328 nucleotides
mRNA_2389: 10757 - K10901 BLM, RECQL3, SGS1 bloom syndrome protein, at 4,587 to 7,344
10757
mRNA_2390: 10758 - Hypothetical Protein, at 8,054 to 9,276
10758
mRNA_2391: 10759 - HMMPfam-Chaperone for protein-folding within the ER, fungal-PF10681, at 9,601 to 10,907
10759
mRNA_2392: 10760 - K10364 CAPZA capping protein (actin filament) muscle Z-line, alpha, at 11,217 to 13,113
10760
mRNA_2393: 10761 - HMMPfam-Prolyl oligopeptidase family-PF00326,HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 13,442 to 14,834
10761
Group
Condition
mRNA
_2389
mRNA
_2390
mRNA
_2391
mRNA
_2392
mRNA
_2393
10757
10758
10759
10760
10761
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
N.D.
+0.1
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.3
N.D.
+0.3
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.1
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.0
N.D.
+0.1
-0.0
growth on ypd
YPD
+0.1
+0.5
N.D.
-0.6
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.5
N.D.
+0.7
-0.3
auxotrophy
Dropout Complete
-0.4
-0.0
N.D.
+0.3
-0.0
growth on ricinoleic acid
YNB Glucose
-0.0
-0.5
N.D.
+0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
N.D.
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.4
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose
-0.2
+0.1
N.D.
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
N.D.
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.4
N.D.
+1.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.5
N.D.
+0.7
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
N.D.
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
N.D.
+0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.3
N.D.
+0.5
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.5
N.D.
-0.2
+0.2
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