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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10758 and 10759 are separated by 324 nucleotides
10759 and 10760 are separated by 309 nucleotides
10760 and 10761 are separated by 328 nucleotides
10761 and 10762 are separated by 298 nucleotides
mRNA_2390: 10758 - Hypothetical Protein, at 8,054 to 9,276
10758
mRNA_2391: 10759 - HMMPfam-Chaperone for protein-folding within the ER, fungal-PF10681, at 9,601 to 10,907
10759
mRNA_2392: 10760 - K10364 CAPZA capping protein (actin filament) muscle Z-line, alpha, at 11,217 to 13,113
10760
mRNA_2393: 10761 - HMMPfam-Prolyl oligopeptidase family-PF00326,HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 13,442 to 14,834
10761
mRNA_2394: 10762 - K03648 UNG, UDG uracil-DNA glycosylase, at 15,133 to 16,619
10762
Group
Condition
mRNA
_2390
mRNA
_2391
mRNA
_2392
mRNA
_2393
mRNA
_2394
10758
10759
10760
10761
10762
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.1
-0.8
+0.3
growth on ypd
YPD
+0.5
N.D.
-0.6
-0.1
-0.0
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.1
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
-0.3
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.0
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.5
N.D.
+0.7
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
+0.4
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
-0.2
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.1
-0.0
+0.2
auxotrophy
Dropout Complete
-0.0
N.D.
+0.3
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose
+0.1
N.D.
+0.3
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.3
+0.2
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
N.D.
+0.7
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.0
+0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
+1.1
+0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
+0.5
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
+0.0
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
N.D.
-0.2
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.5
+0.2
+0.4
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