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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10761 and 10762 are separated by 298 nucleotides
10762 and 10763 are separated by 248 nucleotides
10763 and 10764 are separated by 108 nucleotides
10764 and 10765 are separated by 151 nucleotides
mRNA_2393: 10761 - HMMPfam-Prolyl oligopeptidase family-PF00326,HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 13,442 to 14,834
10761
mRNA_2394: 10762 - K03648 UNG, UDG uracil-DNA glycosylase, at 15,133 to 16,619
10762
mRNA_2395: 10763 - SMART-catalytic domain of ctd-like phosphatases-SM00577, at 16,868 to 18,999
10763
mRNA_2396: 10764 - K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2, at 19,108 to 21,174
10764
mRNA_2397: 10765 - Hypothetical Protein, at 21,326 to 23,910
10765
Group
Condition
mRNA
_2393
mRNA
_2394
mRNA
_2395
mRNA
_2396
mRNA
_2397
10761
10762
10763
10764
10765
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.2
-2.8
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
-0.2
-0.9
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.3
-0.3
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
-0.8
+0.0
growth on ypd
YPD
-0.1
-0.0
+0.0
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.3
-0.0
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.2
-0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.5
+0.4
-1.0
+0.1
auxotrophy
Dropout Complete
-0.0
+0.1
-0.0
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.1
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-0.3
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.6
-0.0
-0.6
+0.4
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.0
+0.7
+0.1
auxotrophy
YNB Glucose
+0.0
+0.1
-0.1
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.4
-0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.5
-0.1
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.0
+0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
-0.0
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.1
-0.0
+1.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.2
-0.0
+1.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
+0.1
+0.2
+0.3
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