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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10763 and 10764 are separated by 108 nucleotides
10764 and 10765 are separated by 151 nucleotides
10765 and 10766 are separated by 97 nucleotides
10766 and 10767 are separated by 229 nucleotides
mRNA_2395: 10763 - SMART-catalytic domain of ctd-like phosphatases-SM00577, at 16,868 to 18,999
10763
mRNA_2396: 10764 - K14169 CTU2, NCS2 cytoplasmic tRNA 2-thiolation protein 2, at 19,108 to 21,174
10764
mRNA_2397: 10765 - Hypothetical Protein, at 21,326 to 23,910
10765
mRNA_2398: 10766 - SUPERFAMILY--SSF52047, at 24,008 to 25,280
10766
mRNA_2399: 10767 - Hypothetical Protein, at 25,510 to 29,581
10767
Group
Condition
mRNA
_2395
mRNA
_2396
mRNA
_2397
mRNA
_2398
mRNA
_2399
10763
10764
10765
10766
10767
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-2.8
+0.0
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.9
-0.2
-0.6
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.4
+0.1
-0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.8
+0.0
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-1.0
+0.1
-0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.4
+0.1
-0.1
+0.1
auxotrophy
Dropout Complete
-0.0
+0.2
+0.1
-0.2
-0.1
growth on ypd
YPD
+0.0
-0.1
-0.0
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
+0.0
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.4
+0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.3
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.4
+0.0
-0.0
+0.1
auxotrophy
YNB Glucose
-0.1
+0.3
+0.3
-0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+1.3
-0.2
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.3
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
+0.3
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.6
+0.4
+0.5
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
+0.3
+0.3
+0.5
growth on oleic acid
YNB Oleic Acid
-0.0
+1.0
+0.1
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.0
+0.7
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.3
+0.5
+0.3
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