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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10767 and 10768 are separated by 273 nucleotides
10768 and 10769 are separated by 390 nucleotides
10769 and 10770 are separated by 172 nucleotides
10770 and 10771 are separated by 328 nucleotides
mRNA_2399: 10767 - Hypothetical Protein, at 25,510 to 29,581
10767
mRNA_2400: 10768 - Hypothetical Protein, at 29,855 to 31,003
10768
mRNA_2401: 10769 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 31,394 to 33,493
10769
mRNA_2402: 10770 - K07870 RHOT1, ARHT1 Ras homolog gene family, member T1, at 33,666 to 36,845
10770
mRNA_2403: 10771 - HMMPfam-Protein of unknown function (DUF2462)-PF09495, at 37,174 to 37,596
10771
Group
Condition
mRNA
_2399
mRNA
_2400
mRNA
_2401
mRNA
_2402
mRNA
_2403
10767
10768
10769
10770
10771
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.3
-0.3
-0.4
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.3
-0.0
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
-0.2
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
+0.2
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.5
-0.1
-0.6
auxotrophy
Dropout Complete
-0.1
+0.0
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose
-0.1
+0.2
+0.1
+0.0
-0.2
growth on ypd
YPD
+0.1
+0.2
-0.1
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
-0.3
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
-0.0
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.2
+0.2
-0.1
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
+0.1
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.3
+0.0
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.4
-0.2
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
-0.4
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
+0.1
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
+0.3
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
+0.3
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.2
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
+0.1
+0.3
+0.4
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