Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10769 and 10770 are separated by 172 nucleotides10770 and 10771 are separated by 328 nucleotides10771 and 10772 are separated by 344 nucleotides10772 and 10773 are separated by 1026 nucleotides mRNA_2401: 10769 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 31,394 to 33,493 10769 mRNA_2402: 10770 - K07870 RHOT1, ARHT1 Ras homolog gene family, member T1, at 33,666 to 36,845 10770 mRNA_2403: 10771 - HMMPfam-Protein of unknown function (DUF2462)-PF09495, at 37,174 to 37,596 10771 mRNA_2404: 10772 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 37,941 to 40,154 10772 mRNA_2405: 10773 - KOG1910 Uncharacterized conserved protein, at 41,181 to 51,337 10773
Group Condition mRNA_2401 mRNA_2402 mRNA_2403 mRNA_2404 mRNA_2405
10769 10770 10771 10772 10773
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -0.4 -0.5 -0.1 -0.4
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 +0.1 +0.1 +0.1 -1.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.5 -0.1 -0.6 +0.2 -0.5
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.2 -0.1 -0.1 -0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.4 +0.1 +0.3 +0.1
growth on oleic acid YNB Oleic Acid -0.0 -0.1 -0.1 +0.2 -0.2
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.2 -0.1 -0.1 -0.1
growth on ypd YPD -0.1 -0.4 +0.1 +0.2 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.2 +0.2 -0.1 -0.1 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 -0.1 -0.2 +0.0 +0.7
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.0 +0.0 +0.3 +0.2
growth on oleic acid YNB Glucose -0.1 -0.0 -0.2 +0.3 +0.7
auxotrophy YNB Glucose 75mM Arginine +0.2 -0.1 -0.3 +0.2 +0.7
auxotrophy Dropout Complete +0.1 +0.0 -0.2 +0.3 +0.6
facs on lipid accumulation Sorted High BODIPY Gate -0.4 +0.1 +0.6 +0.2 +0.4
growth on ricinoleic acid YNB Glucose -0.3 +0.2 -0.0 +0.1 +0.9
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 +0.3 +0.2 +0.2 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 +0.0 +0.6 +0.0 +0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 +0.3 +0.4 +0.1 +0.3
auxotrophy YNB Glucose +0.1 +0.0 -0.2 +0.4 +0.9
auxotrophy YNB Glucose 75mM Methionine +0.3 +0.3 +0.2 +0.4 +1.1
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