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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10769 and 10770 are separated by 172 nucleotides
10770 and 10771 are separated by 328 nucleotides
10771 and 10772 are separated by 344 nucleotides
10772 and 10773 are separated by 1026 nucleotides
mRNA_2401: 10769 - HMMPfam-von Willebrand factor type A domain-PF13519,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 31,394 to 33,493
10769
mRNA_2402: 10770 - K07870 RHOT1, ARHT1 Ras homolog gene family, member T1, at 33,666 to 36,845
10770
mRNA_2403: 10771 - HMMPfam-Protein of unknown function (DUF2462)-PF09495, at 37,174 to 37,596
10771
mRNA_2404: 10772 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 37,941 to 40,154
10772
mRNA_2405: 10773 - KOG1910 Uncharacterized conserved protein, at 41,181 to 51,337
10773
Group
Condition
mRNA
_2401
mRNA
_2402
mRNA
_2403
mRNA
_2404
mRNA
_2405
10769
10770
10771
10772
10773
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.4
-0.5
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
+0.1
+0.1
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.1
-0.6
+0.2
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
-0.1
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.4
+0.1
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.1
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
-0.1
-0.1
-0.1
growth on ypd
YPD
-0.1
-0.4
+0.1
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
-0.2
+0.0
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
+0.0
+0.3
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.0
-0.2
+0.3
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
-0.3
+0.2
+0.7
auxotrophy
Dropout Complete
+0.1
+0.0
-0.2
+0.3
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.1
+0.6
+0.2
+0.4
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
-0.0
+0.1
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
+0.6
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.4
+0.1
+0.3
auxotrophy
YNB Glucose
+0.1
+0.0
-0.2
+0.4
+0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
+0.2
+0.4
+1.1
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