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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10772 and 10773 are separated by 1026 nucleotides
10773 and 10774 are separated by 709 nucleotides
10774 and 10775 are separated by 99 nucleotides
10775 and 10776 are separated by 228 nucleotides
mRNA_2404: 10772 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 37,941 to 40,154
10772
mRNA_2405: 10773 - KOG1910 Uncharacterized conserved protein, at 41,181 to 51,337
10773
mRNA_2406: 10774 - KOG4111 Translocase of outer mitochondrial membrane complex, subunit TOM22, at 52,047 to 52,986
10774
mRNA_2407: 10775 - K10880 XRCC3 DNA-repair protein XRCC3, at 53,086 to 55,006
10775
mRNA_2408: 10776 - K07975 K07975 Rho family, other, at 55,235 to 56,824
10776
Group
Condition
mRNA
_2404
mRNA
_2405
mRNA
_2406
mRNA
_2407
mRNA
_2408
10772
10773
10774
10775
10776
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.5
-0.3
-2.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-1.2
+0.0
+0.2
-2.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
-0.5
-1.2
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.4
-0.6
-2.7
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
-0.3
-0.8
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.7
+0.5
-0.2
-1.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
-0.2
-0.3
-0.5
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
-0.3
-0.3
+0.1
growth on ypd
YPD
+0.2
+0.1
-0.1
-1.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.2
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
-0.3
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.3
-0.1
-0.3
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.9
+0.8
-1.0
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.2
+0.6
+0.0
growth on oleic acid
YNB Glucose
+0.3
+0.7
-0.2
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
+0.3
+0.8
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.7
+0.0
+0.0
-0.4
auxotrophy
Dropout Complete
+0.3
+0.6
+0.6
-0.2
-0.4
auxotrophy
YNB Glucose
+0.4
+0.9
+0.3
+0.1
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.3
+0.6
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+1.1
+0.5
+0.1
-0.2
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