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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10774 and 10775 are separated by 99 nucleotides
10775 and 10776 are separated by 228 nucleotides
10776 and 10777 are separated by 84 nucleotides
10777 and 10778 are separated by 832 nucleotides
mRNA_2406: 10774 - KOG4111 Translocase of outer mitochondrial membrane complex, subunit TOM22, at 52,047 to 52,986
10774
mRNA_2407: 10775 - K10880 XRCC3 DNA-repair protein XRCC3, at 53,086 to 55,006
10775
mRNA_2408: 10776 - K07975 K07975 Rho family, other, at 55,235 to 56,824
10776
mRNA_2409: 10777 - Hypothetical Protein, at 56,909 to 58,334
10777
mRNA_2410: 10778 - Hypothetical Protein, at 59,167 to 60,066
10778
Group
Condition
mRNA
_2406
mRNA
_2407
mRNA
_2408
mRNA
_2409
mRNA
_2410
10774
10775
10776
10777
10778
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-2.7
+0.1
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-1.2
-0.5
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-2.4
-0.2
+0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.2
-1.9
-0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.2
-2.3
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.8
-0.4
+0.3
+0.3
growth on ricinoleic acid
YNB Glucose
+0.8
-1.0
-0.6
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.0
-0.4
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
-0.5
+0.3
+0.4
growth on ypd
YPD
-0.1
-1.0
+0.3
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
+0.1
+0.2
+0.1
auxotrophy
YNB Glucose
+0.3
+0.1
-0.8
+0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
+0.4
-0.2
+0.2
auxotrophy
Dropout Complete
+0.6
-0.2
-0.4
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.3
-0.1
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.5
+0.2
+0.4
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
-0.2
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
+0.2
+0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.6
-0.2
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.8
-0.4
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.6
+0.0
+0.2
+0.2
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