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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10776 and 10777 are separated by 84 nucleotides
10777 and 10778 are separated by 832 nucleotides
10778 and 10779 are separated by 903 nucleotides
10779 and 10780 are separated by 454 nucleotides
mRNA_2408: 10776 - K07975 K07975 Rho family, other, at 55,235 to 56,824
10776
mRNA_2409: 10777 - Hypothetical Protein, at 56,909 to 58,334
10777
mRNA_2410: 10778 - Hypothetical Protein, at 59,167 to 60,066
10778
mRNA_2411: 10779 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 60,970 to 61,863
10779
mRNA_2412: 10780 - K04378 SRF serum response factor, at 62,318 to 64,458
10780
Group
Condition
mRNA
_2408
mRNA
_2409
mRNA
_2410
mRNA
_2411
mRNA
_2412
10776
10777
10778
10779
10780
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.3
+0.0
+0.6
-0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.1
-0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.9
-0.3
+0.3
-0.1
+1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
-0.0
+0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
-0.1
-0.3
+0.0
auxotrophy
Dropout Complete
-0.4
+0.2
-0.1
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
-0.2
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
+0.2
-0.1
-0.5
auxotrophy
YNB Glucose
-0.8
+0.4
-0.2
-0.2
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.4
+0.2
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
-0.0
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.3
+0.4
+0.2
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.1
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
-0.6
+0.0
+0.3
-0.2
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.2
+0.2
+0.6
growth on ypd
YPD
+0.3
+0.3
+0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.3
+0.3
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.2
+0.0
+0.1
growth on oleic acid
YNB Glucose
-0.1
+0.5
+0.2
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.5
+0.1
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.4
+0.4
+0.2
+1.3
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