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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10777 and 10778 are separated by 832 nucleotides
10778 and 10779 are separated by 903 nucleotides
10779 and 10780 are separated by 454 nucleotides
10780 and 10781 are separated by 476 nucleotides
mRNA_2409: 10777 - Hypothetical Protein, at 56,909 to 58,334
10777
mRNA_2410: 10778 - Hypothetical Protein, at 59,167 to 60,066
10778
mRNA_2411: 10779 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 60,970 to 61,863
10779
mRNA_2412: 10780 - K04378 SRF serum response factor, at 62,318 to 64,458
10780
mRNA_2413: 10781 - K13108 SNIP1 smad nuclear-interacting protein 1, at 64,935 to 66,206
10781
Group
Condition
mRNA
_2409
mRNA
_2410
mRNA
_2411
mRNA
_2412
mRNA
_2413
10777
10778
10779
10780
10781
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.1
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
-0.3
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.1
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
+0.1
-0.4
N.D.
auxotrophy
Dropout Complete
+0.2
-0.1
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.2
-0.4
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
+0.1
-0.2
N.D.
growth on ypd
YPD
+0.3
+0.2
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
-0.0
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.4
+0.2
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
+0.0
+0.1
N.D.
auxotrophy
YNB Glucose
+0.4
-0.2
-0.2
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
+0.2
+0.6
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
-0.2
+0.7
N.D.
growth on oleic acid
YNB Glucose
+0.5
+0.2
-0.0
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.3
-0.1
+1.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.1
+0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.6
-0.0
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.4
+0.2
+1.3
N.D.
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