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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10781 and 10782 are separated by 1259 nucleotides
10782 and 10783 are separated by 41 nucleotides
10783 and 10784 are separated by 898 nucleotides
10784 and 10785 are separated by 157 nucleotides
mRNA_2413: 10781 - K13108 SNIP1 smad nuclear-interacting protein 1, at 64,935 to 66,206
10781
mRNA_2414: 10782 - KOG1185 Thiamine pyrophosphate-requiring enzyme, at 67,466 to 70,057
10782
mRNA_2415: 10783 - Hypothetical Protein, at 70,099 to 71,162
10783
mRNA_2416: 10784 - SUPERFAMILY--SSF51445, at 72,061 to 74,634
10784
mRNA_2417: 10785 - SUPERFAMILY--SSF52047, at 74,792 to 76,110
10785
Group
Condition
mRNA
_2413
mRNA
_2414
mRNA
_2415
mRNA
_2416
mRNA
_2417
10781
10782
10783
10784
10785
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
-0.4
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.6
+0.3
-1.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
-0.4
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.3
+0.4
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.3
+0.3
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.0
-0.2
+0.4
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.1
-0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.5
-0.8
+0.3
-0.5
growth on ypd
YPD
N.D.
-0.0
+0.0
+0.0
-0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.3
+0.2
-0.5
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.1
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
+0.0
-0.3
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
-0.3
+0.1
-0.2
auxotrophy
Dropout Complete
N.D.
+0.2
-0.3
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.4
+0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.3
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
-0.0
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.1
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.0
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.0
+0.2
-0.1
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