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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10784 and 10785 are separated by 157 nucleotides
10785 and 10786 are separated by 959 nucleotides
10786 and 10787 are separated by 113 nucleotides
10787 and 10788 are separated by 278 nucleotides
mRNA_2416: 10784 - SUPERFAMILY--SSF51445, at 72,061 to 74,634
10784
mRNA_2417: 10785 - SUPERFAMILY--SSF52047, at 74,792 to 76,110
10785
mRNA_2418: 10786 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 77,070 to 79,296
10786
mRNA_2419: 10787 - HMMPfam-Domain of unknown function (DUF4385)-PF14328, at 79,410 to 80,151
10787
mRNA_2420: 10788 - KOG2618 Uncharacterized conserved protein, at 80,430 to 82,352
10788
Group
Condition
mRNA
_2416
mRNA
_2417
mRNA
_2418
mRNA
_2419
mRNA
_2420
10784
10785
10786
10787
10788
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.2
-0.4
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.4
+0.1
-0.2
+0.1
growth on ypd
YPD
+0.0
-0.5
-0.0
+0.3
-0.4
auxotrophy
Dropout Complete
-0.1
-0.0
-0.1
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
-0.3
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
-0.0
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
+0.2
-0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.3
-0.2
+0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.5
+0.1
-0.3
+0.3
growth on oleic acid
YNB Glucose
-0.3
-0.1
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-1.0
+0.3
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
-0.2
-0.2
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
-0.1
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.2
-0.3
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.8
+0.1
+0.1
+0.1
auxotrophy
YNB Glucose
+0.1
-0.2
-0.0
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-1.0
+0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.6
+0.3
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
-0.0
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.5
+0.6
+0.2
+0.5
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