Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 10785 and 10786 are separated by 959 nucleotides10786 and 10787 are separated by 113 nucleotides10787 and 10788 are separated by 278 nucleotides10788 and 10789 are separated by 126 nucleotides mRNA_2417: 10785 - SUPERFAMILY--SSF52047, at 74,792 to 76,110 10785 mRNA_2418: 10786 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 77,070 to 79,296 10786 mRNA_2419: 10787 - HMMPfam-Domain of unknown function (DUF4385)-PF14328, at 79,410 to 80,151 10787 mRNA_2420: 10788 - KOG2618 Uncharacterized conserved protein, at 80,430 to 82,352 10788 mRNA_2421: 10789 - K11800 WDR22, BCRP2 WD repeat-containing protein 22, at 82,479 to 84,495 10789
Group Condition mRNA_2417 mRNA_2418 mRNA_2419 mRNA_2420 mRNA_2421
10785 10786 10787 10788 10789
growth on ypd YPD -0.5 -0.0 +0.3 -0.4 -0.6
auxotrophy Dropout Complete -0.0 -0.1 -0.2 -0.1 -0.6
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 -0.2 +0.4 -0.3 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.4 +0.1 -0.2 +0.1 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.8 +0.1 +0.1 +0.1 -0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.0 +0.2 -0.1 -0.3
ypd buoyancy 40 hrs High Buoyancy -0.5 +0.1 -0.3 +0.3 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -1.0 +0.3 -0.1 +0.2 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.0 +0.3 +0.2 +0.3 -0.1
growth on ricinoleic acid YNB Glucose -0.2 -0.2 +0.2 -0.3 +0.1
auxotrophy YNB Glucose -0.2 -0.0 +0.3 -0.0 -0.3
auxotrophy YNB Glucose 75mM Arginine -0.1 -0.1 +0.3 -0.1 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.3 +0.2 -0.1 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 -0.4 +0.2 -0.2 +0.4
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.3 +0.3 -0.1 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 +0.6 +0.2 +0.5 -0.9
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.0 +0.4 -0.1 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.2 -0.4 +0.2 +0.1
growth on oleic acid YNB Glucose -0.1 +0.1 +0.1 +0.1 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.6 +0.3 +0.0 +0.1 +0.2
growth on oleic acid YNB Oleic Acid +0.2 +0.1 +0.0 +0.1 +0.1
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