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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10785 and 10786 are separated by 959 nucleotides
10786 and 10787 are separated by 113 nucleotides
10787 and 10788 are separated by 278 nucleotides
10788 and 10789 are separated by 126 nucleotides
mRNA_2417: 10785 - SUPERFAMILY--SSF52047, at 74,792 to 76,110
10785
mRNA_2418: 10786 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 77,070 to 79,296
10786
mRNA_2419: 10787 - HMMPfam-Domain of unknown function (DUF4385)-PF14328, at 79,410 to 80,151
10787
mRNA_2420: 10788 - KOG2618 Uncharacterized conserved protein, at 80,430 to 82,352
10788
mRNA_2421: 10789 - K11800 WDR22, BCRP2 WD repeat-containing protein 22, at 82,479 to 84,495
10789
Group
Condition
mRNA
_2417
mRNA
_2418
mRNA
_2419
mRNA
_2420
mRNA
_2421
10785
10786
10787
10788
10789
growth on ypd
YPD
-0.5
-0.0
+0.3
-0.4
-0.6
auxotrophy
Dropout Complete
-0.0
-0.1
-0.2
-0.1
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
+0.4
-0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
-0.2
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+0.1
+0.1
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
+0.2
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.1
-0.3
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
+0.3
-0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
+0.3
+0.2
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
+0.2
-0.3
+0.1
auxotrophy
YNB Glucose
-0.2
-0.0
+0.3
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
+0.3
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
+0.2
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.4
+0.2
-0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
+0.3
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.6
+0.2
+0.5
-0.9
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
+0.4
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
-0.4
+0.2
+0.1
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.3
+0.0
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
+0.0
+0.1
+0.1
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