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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10789 and 10790 are separated by 140 nucleotides
10790 and 10791 are separated by 222 nucleotides
10791 and 10792 are separated by 581 nucleotides
10792 and 10793 are separated by 119 nucleotides
mRNA_2421: 10789 - K11800 WDR22, BCRP2 WD repeat-containing protein 22, at 82,479 to 84,495
10789
mRNA_2422: 10790 - KOG2342 Uncharacterized conserved protein, at 84,636 to 85,865
10790
mRNA_2423: 10791 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 86,088 to 89,055
10791
mRNA_2424: 10792 - KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation), at 89,637 to 90,963
10792
mRNA_2425: 10793 - K02732 PSMB1 20S proteasome subunit beta 6, at 91,083 to 92,591
10793
Group
Condition
mRNA
_2421
mRNA
_2422
mRNA
_2423
mRNA
_2424
mRNA
_2425
10789
10790
10791
10792
10793
auxotrophy
Dropout Complete
-0.6
-0.3
-0.1
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+0.2
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.4
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
-0.2
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.6
+0.2
-0.4
N.D.
auxotrophy
YNB Glucose
-0.3
-0.0
+0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
-0.0
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
+0.0
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
-0.4
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
-0.3
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
-0.3
+0.7
N.D.
growth on ypd
YPD
-0.6
-0.0
+0.3
+0.7
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.0
+0.3
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.0
+0.2
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
+0.3
+0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.3
+0.0
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
+0.2
+0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.0
+0.8
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.3
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
+0.1
+0.7
N.D.
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