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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10792 and 10793 are separated by 119 nucleotides
10793 and 10794 are separated by 373 nucleotides
10794 and 10795 are separated by 549 nucleotides
10795 and 10796 are separated by 64 nucleotides
mRNA_2424: 10792 - KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation), at 89,637 to 90,963
10792
mRNA_2425: 10793 - K02732 PSMB1 20S proteasome subunit beta 6, at 91,083 to 92,591
10793
mRNA_2426: 10794 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 92,965 to 95,698
10794
mRNA_2427: 10795 - Hypothetical Protein, at 96,248 to 96,907
10795
mRNA_2428: 10796 - KOG0583 Serine/threonine protein kinase, at 96,972 to 102,025
10796
Group
Condition
mRNA
_2424
mRNA
_2425
mRNA
_2426
mRNA
_2427
mRNA
_2428
10792
10793
10794
10795
10796
auxotrophy
Dropout Complete
-0.4
N.D.
+0.2
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.5
N.D.
+0.1
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
-0.1
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.2
+0.0
-0.1
auxotrophy
YNB Glucose
-0.1
N.D.
+0.1
-0.3
+0.2
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
-0.1
-0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
+0.1
-0.1
-0.5
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.0
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
N.D.
-0.4
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
+0.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.2
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.5
N.D.
+0.1
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
N.D.
-0.0
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.8
N.D.
-0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
+0.2
-0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
N.D.
-0.1
-0.0
+0.2
growth on ypd
YPD
+0.7
N.D.
-0.0
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
N.D.
+0.0
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
N.D.
+0.3
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
N.D.
+0.4
+0.4
+0.3
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