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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10798 and 10799 are separated by 518 nucleotides
10799 and 10800 are separated by 967 nucleotides
10800 and 10801 are separated by 157 nucleotides
10801 and 10802 are separated by 723 nucleotides
mRNA_2430: 10798 - K09467 MIG zinc-finger protein CreA/MIG, at 106,611 to 109,400
10798
mRNA_2431: 10799 - Hypothetical Protein, at 109,919 to 110,380
10799
mRNA_2432: 10800 - K20028 ZDHHC2_15_20 palmitoyltransferase ZDHHC2/15/20, at 111,348 to 112,998
10800
mRNA_2433: 10801 - K10866 RAD50 DNA repair protein RAD50, at 113,156 to 118,783
10801
mRNA_2434: 10802 - HMMPfam-ATP synthase subunit H-PF05493, at 119,507 to 119,841
10802
Group
Condition
mRNA
_2430
mRNA
_2431
mRNA
_2432
mRNA
_2433
mRNA
_2434
10798
10799
10800
10801
10802
ypd buoyancy
40 hrs Low Buoyancy
-3.9
+0.2
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-2.3
+0.0
+0.4
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
-0.1
-1.3
N.D.
growth on ypd
YPD
-0.0
-0.4
+0.1
-1.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.3
-0.9
-1.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.8
-0.1
+0.3
+0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
-0.2
-0.9
N.D.
auxotrophy
Dropout Complete
+0.2
+0.3
-0.9
-0.4
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
+0.1
-0.5
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.0
-0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.5
-0.6
-0.5
N.D.
auxotrophy
YNB Glucose
+0.1
+0.4
-0.5
-0.3
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.2
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.3
+0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.2
-0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.3
-1.4
+0.7
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.1
+0.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
-0.1
+0.4
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
+0.7
+0.6
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.1
+0.1
+0.7
N.D.
growth on oleic acid
YNB Oleic Acid
+1.4
-0.1
-0.2
+0.4
N.D.
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