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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10800 and 10801 are separated by 157 nucleotides
10801 and 10802 are separated by 723 nucleotides
10802 and 10803 are separated by 967 nucleotides
10803 and 10804 are separated by 276 nucleotides
mRNA_2432: 10800 - K20028 ZDHHC2_15_20 palmitoyltransferase ZDHHC2/15/20, at 111,348 to 112,998
10800
mRNA_2433: 10801 - K10866 RAD50 DNA repair protein RAD50, at 113,156 to 118,783
10801
mRNA_2434: 10802 - HMMPfam-ATP synthase subunit H-PF05493, at 119,507 to 119,841
10802
mRNA_2435: 10803 - Hypothetical Protein, at 120,809 to 121,330
10803
mRNA_2436: 10804 - KOG0254 Predicted transporter (major facilitator superfamily), at 121,607 to 125,074
10804
Group
Condition
mRNA
_2432
mRNA
_2433
mRNA
_2434
mRNA
_2435
mRNA
_2436
10800
10801
10802
10803
10804
auxotrophy
YNB Glucose 75mM Arginine
-0.9
-1.0
N.D.
-0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.9
N.D.
-0.2
-0.2
auxotrophy
Dropout Complete
-0.9
-0.4
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.3
N.D.
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.4
+0.7
N.D.
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.5
N.D.
-0.2
+0.4
growth on ypd
YPD
+0.1
-1.0
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.5
+0.0
N.D.
-0.2
-0.0
auxotrophy
YNB Glucose
-0.5
-0.3
N.D.
-0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.0
N.D.
-0.0
-0.3
growth on oleic acid
YNB Glucose
-0.0
+0.0
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
N.D.
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.4
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.2
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.7
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
N.D.
+0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
N.D.
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.5
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.6
N.D.
-0.0
-0.1
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