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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10806 and 10807 are separated by 213 nucleotides
10807 and 10808 are separated by 420 nucleotides
10808 and 10809 are separated by 418 nucleotides
10809 and 10810 are separated by 415 nucleotides
mRNA_2438: 10806 - HMMPfam-Predicted coiled-coil protein (DUF2205)-PF10224, at 131,945 to 132,522
10806
mRNA_2439: 10807 - BLAST ribosome biogenesis protein [Moniliophthora rorer..., at 132,736 to 133,822
10807
mRNA_2440: 10808 - Hypothetical Protein, at 134,243 to 137,592
10808
mRNA_2441: 10809 - KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase, at 138,011 to 140,441
10809
mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140,857 to 142,808
10810
Group
Condition
mRNA
_2438
mRNA
_2439
mRNA
_2440
mRNA
_2441
mRNA
_2442
10806
10807
10808
10809
10810
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.0
N.D.
-0.4
-2.2
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-1.2
N.D.
-0.4
-0.8
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
N.D.
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
N.D.
+0.1
-1.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-1.0
N.D.
-0.1
-0.2
+0.0
growth on ypd
YPD
-0.6
N.D.
-0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
-0.2
+0.2
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.4
N.D.
-0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.2
+0.0
-0.3
auxotrophy
YNB Glucose
+0.2
N.D.
+0.0
-0.3
-0.0
growth on oleic acid
YNB Oleic Acid
+1.0
N.D.
-0.4
+0.3
-0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.5
N.D.
-0.4
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.2
+0.1
+0.4
auxotrophy
Dropout Complete
+0.5
N.D.
-0.1
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.1
+0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.1
N.D.
-0.4
+0.4
-0.5
growth on ricinoleic acid
YNB Glucose
+1.0
N.D.
-0.3
+0.3
-0.4
growth on oleic acid
YNB Glucose
+0.8
N.D.
-0.2
+0.6
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
N.D.
+0.0
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.4
N.D.
-0.0
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+2.4
N.D.
-0.0
+1.0
-0.2
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