Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10807 and 10808 are separated by 420 nucleotides10808 and 10809 are separated by 418 nucleotides10809 and 10810 are separated by 415 nucleotides10810 and 10811 are separated by 538 nucleotides mRNA_2439: 10807 - BLAST ribosome biogenesis protein [Moniliophthora rorer..., at 132,736 to 133,822 10807 mRNA_2440: 10808 - Hypothetical Protein, at 134,243 to 137,592 10808 mRNA_2441: 10809 - KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase, at 138,011 to 140,441 10809 mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140,857 to 142,808 10810 mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143,347 to 145,508 10811
Group Condition mRNA_2439 mRNA_2440 mRNA_2441 mRNA_2442 mRNA_2443
10807 10808 10809 10810 10811
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.4 -2.2 -0.5 -0.5
growth on ricinoleic acid YNB Ricinoleic Acid N.D. -0.2 +0.2 -0.6 -1.4
growth on oleic acid YNB Oleic Acid N.D. -0.4 +0.3 -0.8 -1.0
facs on lipid accumulation Sorted High BODIPY Gate N.D. +0.1 -1.4 +0.1 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. -0.4 +0.4 -0.5 -0.8
facs on lipid accumulation Sorted No BODIPY Gate N.D. -0.4 -0.8 -0.0 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation N.D. +0.1 -0.1 -0.1 -0.7
auxotrophy YNB Glucose 75mM Arginine N.D. -0.2 +0.0 -0.3 -0.1
growth on ypd YPD N.D. -0.1 +0.0 -0.1 -0.4
growth on ricinoleic acid YNB Glucose N.D. -0.3 +0.3 -0.4 -0.2
auxotrophy Dropout Complete N.D. -0.1 +0.2 -0.2 -0.2
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.4 +0.2 -0.1 +0.0
growth on oleic acid YNB Glucose N.D. -0.2 +0.6 -0.5 -0.2
auxotrophy YNB Glucose N.D. +0.0 -0.3 -0.0 +0.1
ypd buoyancy 40 hrs High Buoyancy N.D. -0.1 -0.2 +0.0 +0.0
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.2 +0.1 +0.1 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.0 +0.0 +0.4 -0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -0.2 +0.1 +0.4 +0.0
auxotrophy YNB Glucose 75mM Methionine N.D. -0.1 +0.5 +0.1 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. +0.0 +0.2 +0.4 +0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. -0.0 +1.0 -0.2 -0.1
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