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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10809 and 10810 are separated by 415 nucleotides
10810 and 10811 are separated by 538 nucleotides
10811 and 10812 are separated by 351 nucleotides
10812 and 10813 are separated by 1096 nucleotides
mRNA_2441: 10809 - KOG1284 Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase, at 138,011 to 140,441
10809
mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140,857 to 142,808
10810
mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143,347 to 145,508
10811
mRNA_2444: 10812 - KOG4505 Na+/H+ antiporter, at 145,860 to 150,269
10812
mRNA_2445: 10813 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 151,366 to 153,133
10813
Group
Condition
mRNA
_2441
mRNA
_2442
mRNA
_2443
mRNA
_2444
mRNA
_2445
10809
10810
10811
10812
10813
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.2
-0.5
-0.5
-4.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
+0.1
-0.2
-2.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.0
-0.0
-1.9
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.6
-1.4
-0.9
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.8
-1.0
-0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.7
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.5
-0.8
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.0
-0.5
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
+0.0
+0.1
-0.5
growth on oleic acid
YNB Glucose
+0.6
-0.5
-0.2
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.3
-0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.4
-0.3
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.4
+0.0
-1.1
+0.4
auxotrophy
Dropout Complete
+0.2
-0.2
-0.2
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.4
-0.2
+0.6
-0.1
auxotrophy
YNB Glucose
-0.3
-0.0
+0.1
+0.4
+0.1
growth on ypd
YPD
+0.0
-0.1
-0.4
+0.3
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.0
-0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
-0.1
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-0.2
-0.1
-0.1
+0.4
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