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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10813 and 10814 are separated by 367 nucleotides
10814 and 10815 are separated by 266 nucleotides
10815 and 10816 are separated by 872 nucleotides
10816 and 10817 are separated by 376 nucleotides
mRNA_2445: 10813 - HMMPfam-Protein of unknown function (DUF3533)-PF12051, at 151,366 to 153,133
10813
mRNA_2446: 10814 - K11396 YNG2, EAF4 chromatin modification-related protein YNG2, at 153,501 to 155,365
10814
mRNA_2447: 10815 - Hypothetical Protein, at 155,632 to 156,162
10815
mRNA_2448: 10816 - Hypothetical Protein, at 157,035 to 159,573
10816
mRNA_2449: 10817 - KOG1343 Histone deacetylase complex, catalytic component HDA1, at 159,950 to 161,445
10817
Group
Condition
mRNA
_2445
mRNA
_2446
mRNA
_2447
mRNA
_2448
mRNA
_2449
10813
10814
10815
10816
10817
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
-0.0
-0.4
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
+0.1
-0.3
-0.5
auxotrophy
Dropout Complete
-0.1
N.D.
-0.1
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.5
N.D.
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.6
N.D.
+0.1
-0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
+0.2
-0.5
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.0
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
-0.2
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.1
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.0
-0.1
-0.1
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.2
-0.4
+0.0
growth on ypd
YPD
+0.7
N.D.
-0.1
-0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.1
-0.2
+0.2
auxotrophy
YNB Glucose
+0.1
N.D.
-0.1
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
+0.2
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
-0.1
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.0
+0.0
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
+0.0
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.1
-0.1
+1.4
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