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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10816 and 10817 are separated by 376 nucleotides
10817 and 10818 are separated by 94 nucleotides
10818 and 10819 are separated by 352 nucleotides
10819 and 10820 are separated by 259 nucleotides
mRNA_2448: 10816 - Hypothetical Protein, at 157,035 to 159,573
10816
mRNA_2449: 10817 - KOG1343 Histone deacetylase complex, catalytic component HDA1, at 159,950 to 161,445
10817
mRNA_2450: 10818 - KOG3037 Cell membrane glycoprotein, at 161,540 to 163,035
10818
mRNA_2451: 10819 - Hypothetical Protein, at 163,388 to 164,949
10819
mRNA_2452: 10820 - HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615, at 165,209 to 166,286
10820
Group
Condition
mRNA
_2448
mRNA
_2449
mRNA
_2450
mRNA
_2451
mRNA
_2452
10816
10817
10818
10819
10820
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.5
-0.8
-0.6
-0.2
auxotrophy
Dropout Complete
-0.5
-0.2
-0.4
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.5
+0.2
-0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
-0.4
-0.3
-0.4
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
-0.7
-0.6
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
-0.8
-0.6
+0.6
growth on oleic acid
YNB Glucose
-0.4
+0.0
-0.4
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.4
-0.0
-0.2
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
-0.7
-0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-0.5
-0.7
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.2
+0.0
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
-0.6
+0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.3
+0.2
-0.3
+0.7
growth on ypd
YPD
-0.1
-0.6
+0.6
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
-0.0
-0.7
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.3
-0.4
+0.3
auxotrophy
YNB Glucose
-0.2
+0.1
-0.4
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.8
+0.0
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
+0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.5
+0.2
+0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+1.4
+0.4
+0.5
-0.3
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