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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10817 and 10818 are separated by 94 nucleotides
10818 and 10819 are separated by 352 nucleotides
10819 and 10820 are separated by 259 nucleotides
10820 and 10821 are separated by 468 nucleotides
mRNA_2449: 10817 - KOG1343 Histone deacetylase complex, catalytic component HDA1, at 159,950 to 161,445
10817
mRNA_2450: 10818 - KOG3037 Cell membrane glycoprotein, at 161,540 to 163,035
10818
mRNA_2451: 10819 - Hypothetical Protein, at 163,388 to 164,949
10819
mRNA_2452: 10820 - HMMPfam-Ribonuclease H2 non-catalytic subunit (Ylr154p-like)-PF08615, at 165,209 to 166,286
10820
mRNA_2453: 10821 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 166,755 to 168,701
10821
Group
Condition
mRNA
_2449
mRNA
_2450
mRNA
_2451
mRNA
_2452
mRNA
_2453
10817
10818
10819
10820
10821
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.8
-0.6
-0.2
-0.4
growth on ricinoleic acid
YNB Glucose
-0.0
-0.7
-0.6
+0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.4
-0.3
-0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.8
-0.6
+0.6
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.7
-0.2
+0.2
-0.1
auxotrophy
Dropout Complete
-0.2
-0.4
-0.2
-0.3
+0.3
growth on oleic acid
YNB Glucose
+0.0
-0.4
-0.5
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.0
-0.2
-0.8
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.2
-0.3
-0.5
+0.4
growth on oleic acid
YNB Oleic Acid
+0.1
-0.5
-0.7
+0.5
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
-0.4
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
-0.7
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.6
+0.1
+0.4
+0.1
growth on ypd
YPD
-0.6
+0.6
+0.2
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
-0.3
+0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
-0.4
+0.3
+0.1
auxotrophy
YNB Glucose
+0.1
-0.4
+0.1
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
+0.0
-0.1
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.2
+0.1
+0.4
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+1.4
+0.4
+0.5
-0.3
-0.1
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