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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10824 and 10825 are separated by 1824 nucleotides
10825 and 10826 are separated by 3330 nucleotides
10826 and 10827 are separated by 370 nucleotides
10827 and 10828 are separated by 377 nucleotides
mRNA_2456: 10824 - Hypothetical Protein, at 174,898 to 175,908
10824
mRNA_2457: 10825 - K10589 UBE3C ubiquitin-protein ligase E3 C, at 177,733 to 180,454
10825
mRNA_2458: 10826 - K04799 FEN1, RAD2 flap endonuclease-1, at 183,785 to 185,672
10826
mRNA_2459: 10827 - KOG2747 Histone acetyltransferase (MYST family), at 186,043 to 188,568
10827
mRNA_2460: 10828 - SUPERFAMILY--SSF57997, at 188,946 to 195,534
10828
Group
Condition
mRNA
_2456
mRNA
_2457
mRNA
_2458
mRNA
_2459
mRNA
_2460
10824
10825
10826
10827
10828
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
N.D.
-2.8
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
N.D.
-2.9
-0.1
auxotrophy
Dropout Complete
N.D.
-0.1
N.D.
-2.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
N.D.
-1.9
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
N.D.
-1.6
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.7
N.D.
-0.9
-0.1
auxotrophy
YNB Glucose
N.D.
-0.4
N.D.
-1.0
-0.3
growth on ypd
YPD
N.D.
-0.2
N.D.
-0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
N.D.
-0.6
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.5
N.D.
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
N.D.
+0.7
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.2
N.D.
+0.7
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
N.D.
+0.7
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
N.D.
+0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
+0.6
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
N.D.
+1.5
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
+1.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
+1.7
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
N.D.
+2.0
+0.0
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