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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10834 and 10835 are separated by 1264 nucleotides
10835 and 10836 are separated by 1236 nucleotides
10836 and 10837 are separated by 274 nucleotides
10837 and 10838 are separated by 406 nucleotides
mRNA_2466: 10834 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 210,023 to 215,249
10834
mRNA_2467: 10835 - Hypothetical Protein, at 216,514 to 218,202
10835
mRNA_2468: 10836 - HMMPfam-Protein of unknown function (DUF3605)-PF12239, at 219,439 to 220,603
10836
mRNA_2469: 10837 - K12479 VPS45 vacuolar protein sorting-associated protein 45, at 220,878 to 223,726
10837
mRNA_2470: 10838 - K06659 CLB3_4 G2/mitotic-specific cyclin 3/4, at 224,133 to 225,151
10838
Group
Condition
mRNA
_2466
mRNA
_2467
mRNA
_2468
mRNA
_2469
mRNA
_2470
10834
10835
10836
10837
10838
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.7
-1.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.7
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.7
+0.0
N.D.
N.D.
growth on ypd
YPD
-0.1
+0.1
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.7
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.3
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
+0.1
-0.1
-0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.5
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.0
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.5
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
-0.1
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
+0.4
N.D.
N.D.
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