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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10842 and 10843 are separated by 321 nucleotides
10843 and 10844 are separated by 1578 nucleotides
10844 and 10845 are separated by 417 nucleotides
10845 and 10846 are separated by 380 nucleotides
mRNA_2474: 10842 - KOG0603 Ribosomal protein S6 kinase, at 234,258 to 235,956
10842
mRNA_2475: 10843 - BLAST CAMK protein kinase [Microbotryum lychnidis-dioicae p..., at 236,278 to 238,719
10843
mRNA_2476: 10844 - KOG0673 Thymidylate synthase, at 240,298 to 241,620
10844
mRNA_2477: 10845 - K00560 thyA, TYMS thymidylate synthase, at 242,038 to 243,139
10845
mRNA_2478: 10846 - K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6, at 243,520 to 246,165
10846
Group
Condition
mRNA
_2474
mRNA
_2475
mRNA
_2476
mRNA
_2477
mRNA
_2478
10842
10843
10844
10845
10846
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.4
-1.0
N.D.
-0.2
growth on ypd
YPD
-0.2
-0.1
-0.1
N.D.
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.2
-0.5
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.5
-0.5
N.D.
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
+0.2
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
-0.2
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.5
-0.4
+0.2
N.D.
+0.4
auxotrophy
Dropout Complete
-0.1
-0.1
-0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.5
+0.1
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
-0.2
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.5
-0.1
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.4
-0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.4
-0.3
N.D.
+1.3
auxotrophy
YNB Glucose
+0.1
+0.4
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.4
+0.5
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.1
+0.6
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.2
+0.7
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.3
+0.6
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.0
+0.6
N.D.
+1.0
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