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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10844 and 10845 are separated by 417 nucleotides
10845 and 10846 are separated by 380 nucleotides
10846 and 10847 are separated by 690 nucleotides
10847 and 10848 are separated by 77 nucleotides
mRNA_2476: 10844 - KOG0673 Thymidylate synthase, at 240,298 to 241,620
10844
mRNA_2477: 10845 - K00560 thyA, TYMS thymidylate synthase, at 242,038 to 243,139
10845
mRNA_2478: 10846 - K20293 COG6, COD2 conserved oligomeric Golgi complex subunit 6, at 243,520 to 246,165
10846
mRNA_2479: 10847 - Hypothetical Protein, at 246,856 to 249,133
10847
mRNA_2480: 10848 - KOG0907 Thioredoxin, at 249,211 to 249,707
10848
Group
Condition
mRNA
_2476
mRNA
_2477
mRNA
_2478
mRNA
_2479
mRNA
_2480
10844
10845
10846
10847
10848
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.3
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
N.D.
-0.2
+0.6
+0.2
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.2
-0.0
-0.4
growth on ypd
YPD
-0.1
N.D.
-0.5
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
N.D.
+0.9
+0.1
-0.6
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.4
-0.1
-0.7
auxotrophy
Dropout Complete
-0.2
N.D.
+0.2
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.3
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.4
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
+0.2
+0.3
+0.1
auxotrophy
YNB Glucose
-0.1
N.D.
+0.3
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
+1.3
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.1
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.3
+0.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
-0.1
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
N.D.
+0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
N.D.
+0.5
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
N.D.
+0.7
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
N.D.
+1.0
+0.1
-0.2
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